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<h1>Physcomitrella patens (Jan 2008) genome assembly</h1>
<p>
The files listed below are formatted for visualization in the Integrated Genome
Browser, available from <a href="https://bioviz.org">BioViz.org</a>.
</p>
<p>
The gene model annotation file (P_patens_Jan_2008.bed.gz) was made
from version 1.6 GFF and gene information files downloaded from the <a
 href="https://www.cosmoss.org/physcome_project/wiki/Downloads">Cossmoss.org
Downloads page</a> in April, 2014.
</p>
<p>
The file named P_patens_Jan_2008.2bit contains sequence data. It
was made from fasta file also downloaded from <a
 href="http://www.cosmoss.org">CossMoss</a>.
To convert it back
to fasta, use twoBitToFa. 
</p>
The file
<a href="genome.txt">genome.txt</a> lists sequences and their sizes and was made from the 2bit sequence file using twoBitInfo.
</p>
<p>
You can get twoBitInfo, twoBitToFa, faToTwoBit, and related programs from <a href="http://hgdownload.cse.ucsc.edu/admin/exe/">http://hgdownload.cse.ucsc.edu/admin/exe/</a>. 
</p>
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[ICO]NameLast modifiedSizeDescription
[DIR]Parent Directory  -  
[   ]P.patens.V6_filtered_cosmoss_genes.gff.gz27-Sep-2018 13:48 4.6M 
[   ]P_patens_Jan_2008.2bit27-Sep-2018 13:48 115MSequence data in blat 2bit format
[   ]P_patens_Jan_2008.bed.gz27-Sep-2018 13:48 1.8MAnnotation or junction file
[   ]P_patens_Jan_2008.bed.gz.tbi27-Sep-2018 13:48 153KTabix index file
[TXT]annots.xml27-Sep-2018 13:48 391 Annotation and data file list
[   ]cosmoss.genonaut.description.txt.gz27-Sep-2018 13:48 371K 
[TXT]genome.txt27-Sep-2018 13:48 40KChromosome lengths and assembly information
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