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<title>IGB QuickLoad site for the tomato Solanum lycopersicum</title>
<h1>Solanum lycopersicum, ITAG 3.0</h1>
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The data files listed below are for visualization in the Integrated Genome
Browser, available from <a href="https://bioviz.org">BioViz.org</a>.
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<p>
Sequence (.2bit) and gene models (.bed.gz) data files were re-formatted from files downloaded in August, 2017 from the <a href="http://solgenomics.net/organism/Solanum_lycopersicum/genome">SolGenomics Web site</a>. The sequence data were from the ITAG3.0 release of the tomato genome.
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<p> 
Files with extension .gz were compressed and indexed using bgzip and
tabix tools from Heng Li. 
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<p>
The .2bit file was converted from fasta to .2bit format using the faToTwoBit converter from Jim Kent. The genome.txt file was created using twoBitInfo, also from Jim Kent. Executables for these and other tools from Jim Kent are available from <a href="http://hgdownload.cse.ucsc.edu/admin/exe/">http://hgdownload.cse.ucsc.edu/admin/exe/</a>.
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[ICO]NameLast modifiedSizeDescription
[DIR]Parent Directory  -  
[   ]S_lycopersicum_Feb_2017.2bit27-Sep-2018 14:01 198MSequence data in blat 2bit format
[   ]S_lycopersicum_Feb_2017.bed.gz27-Sep-2018 14:01 2.2MAnnotation or junction file
[   ]S_lycopersicum_Feb_2017.bed.gz.tbi27-Sep-2018 14:01 201KTabix index file
[TXT]annots.xml27-Sep-2018 14:01 354 Annotation and data file list
[TXT]genome.txt27-Sep-2018 14:01 247 Chromosome lengths and assembly information
Apache/2.2.15 (Red Hat) Server at igbquickload.org Port 80