strapdown: '/styling/strapdown/v/0.2/strapdown.js'};

Index of /T_castaneum_Mar_2008

[ICO]NameLast modifiedSizeDescription
[DIR]Parent Directory  -  
[   ]Scaffold_Region.gff3.gz27-Sep-2018 13:48 35K 
[   ]Scaffold_Region.gff3.gz.tbi27-Sep-2018 13:48 15KTabix index file
[   ]T_castaneum_Mar_2008.2bit27-Sep-2018 13:48 55MSequence data in blat 2bit format
[   ]T_castaneum_Mar_2008.gff3.gz27-Sep-2018 13:48 1.5MTribolium castaneum (March 2008) red flour beetle
[   ]T_castaneum_Mar_2008.gff3.gz.tbi27-Sep-2018 13:48 95KTabix index file
[TXT]annots.xml27-Sep-2018 13:48 716 Annotation and data file list
[TXT]genome.txt27-Sep-2018 13:48 168 Chromosome lengths and assembly information
Files as follows:
-Scaffold_region.gff3.gz is the layout of each contig across each chromosome, as well as across the concatenated 'Unknown' chromosome. Notice that there are NO spacers between the "DS" series of contigs; there is a 10,000 N spacer between each contig of the "GG" series. 

-T_castanum_Mar_2008.gff3 contains sequence from chromosome files (e.g. ChLG2_official_gene.gff3) plus the Unknown_official_gene.gff3.

-T_castaneum_Mar_2008.2bit is a 2bit sequence file converted from a file named Triboleum_genome_sequence.fasta. The additional 'Unknown' chromosome was assembled by Alyssa A. Gulledge. Unknown has each of the DS series (in sequential order) abut to each other; the transition into the GG series is also abut, but between each GG contig is 10,000bp spacer of N.