strapdown: '/styling/strapdown/v/0.2/strapdown.js'};
<h1>Takifugu rubripes (Oct 2011) Fugu (FUGU5/fr3) genome assembly</h1>
The files listed below are formatted for visualization in the Integrated Genome
Browser, available from <a href=""></a>.
Annotation (bed) and alignment (psl) files were downloaded from the UCSC Genome
Bioinformatics Table Browser. Each file is named for its corresponding table in the
UCSC Genome database. See the <a href="annots.xml">annots.xml</a> meta-data file in
this directory for details.
Files with extension .gz were compressed and indexed using bgzip and
tabix tools from <a href="></a>.
The file named T_rubripes_Oct_2011.2bit contains sequence data and was downloaded from the UCSC Genome
Bioinformatics <a href="">downloads
page</a>. To convert a .2bit to fasta, use twoBitToFa. The file
<a href="genome.txt">genome.txt</a> lists sequences and their sizes and was made from 
T_rubripes_Oct_2011.2bit sequence file using twoBitInfo.
Both twoBitInfo and twoBitToFa are
available from <a href=""></a>.
[ICO]NameLast modifiedSizeDescription
[DIR]Parent Directory  -  
[TXT]annots.xml27-Sep-2018 13:28 1.0KAnnotation and data file list
[   ]T_rubripes_Oct_2011_refGene.bed.gz.tbi27-Sep-2018 13:28 5.4KTabix index file
[   ]T_rubripes_Oct_2011_all_mrna.psl.gz.tbi27-Sep-2018 13:28 8.0KTabix index file
[   ]T_rubripes_Oct_2011_refGene.bed.gz27-Sep-2018 13:28 29KData from UCSC refGene table
[   ]T_rubripes_Oct_2011_all_est.psl.gz.tbi27-Sep-2018 13:28 66KTabix index file
[   ]T_rubripes_Oct_2011_all_mrna.psl.gz27-Sep-2018 13:28 68KPSL (alignments) blat output file
[TXT]genome.txt27-Sep-2018 13:28 95KChromosome lengths and assembly information
[   ]T_rubripes_Oct_2011_all_est.psl.gz27-Sep-2018 13:28 1.1MPSL (alignments) blat output file
[   ]T_rubripes_Oct_2011.2bit27-Sep-2018 13:28 107MSequence data in blat 2bit format
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