<files>
  <file
    name="augustus-take6.bed.gz"
    title="Gene Predictions / Augustus"
    description="Augustus gene models"
    url="V_corymbosum_Aug_2015"
    foreground="000000"
    name_size="14"
    label_field="id"
    background="FFFFFF"
    load_hint="Whole Sequence"
  />
  <file
    name="repeats.bed.gz"
    title="Repeats"
    description="Matches to repetitive elements"
    url="V_corymbosum_Aug_2015"
    foreground="5959a6"
    name_size="16"
    label_field="id"
    background="FFFFFF"
  />
  <file
    name="berrydev_proc/P1_ripe.bam"
    title="RNA-Seq Berry Development / Reads / ripe 2-41 alignments"
    description="read alignments"
    url="V_corymbosum_Aug_2015/berrydev_proc"
    foreground="0000ff"
    background="FFFFFF"
  />
  <file
    name="berrydev_proc/P1_ripe.bedgraph.gz"
    title="RNA-Seq Berry Development / Graph / ripe 2-41, coverage"
    description="coverage graph"
    url="V_corymbosum_Aug_2015/berrydev_proc"
    foreground="0000ff"
    background="FFFFFF"
  />
  <file
    name="berrydev_proc/P1_ripe.bed.gz"
    title="RNA-Seq Berry Development / Junctions / ripe 2-41, tophat junctions"
    description="Junctions predicted by TopHat"
    url="V_corymbosum_Aug_2015/berrydev_proc"
    show2tracks="False"
    foreground="0000ff"
    direction_type="arrow"
    label_field="score"
    background="FFFFFF"
  />
  <file
    name="berrydev_proc/P1_ripe.FJ.bed.gz"
    title="RNA-Seq Berry Development / FJ Juncs / ripe 2-41, LL junctions"
    description="Junctions predicted by Loraine Lab FindJunctions, single-mapping reads only"
    url="V_corymbosum_Aug_2015/berrydev_proc"
    show2tracks="False"
    foreground="0000ff"
    direction_type="arrow"
    label_field="score"
    background="FFFFFF"
  />
  <file
    name="berrydev_proc/P2_ripe.bam"
    title="RNA-Seq Berry Development / Reads / ripe 2-42 alignments"
    description="read alignments"
    url="V_corymbosum_Aug_2015/berrydev_proc"
    foreground="0000ff"
    background="FFFFFF"
  />
  <file
    name="berrydev_proc/P2_ripe.bedgraph.gz"
    title="RNA-Seq Berry Development / Graph / ripe 2-42, coverage"
    description="coverage graph"
    url="V_corymbosum_Aug_2015/berrydev_proc"
    foreground="0000ff"
    background="FFFFFF"
  />
  <file
    name="berrydev_proc/P2_ripe.bed.gz"
    title="RNA-Seq Berry Development / Junctions / ripe 2-42, tophat junctions"
    description="Junctions predicted by TopHat"
    url="V_corymbosum_Aug_2015/berrydev_proc"
    show2tracks="False"
    foreground="0000ff"
    direction_type="arrow"
    label_field="score"
    background="FFFFFF"
  />
  <file
    name="berrydev_proc/P2_ripe.FJ.bed.gz"
    title="RNA-Seq Berry Development / FJ Juncs / ripe 2-42, LL junctions"
    description="Junctions predicted by Loraine Lab FindJunctions, single-mapping reads only"
    url="V_corymbosum_Aug_2015/berrydev_proc"
    show2tracks="False"
    foreground="0000ff"
    direction_type="arrow"
    label_field="score"
    background="FFFFFF"
  />
  <file
    name="berrydev_proc/P3_ripe.bam"
    title="RNA-Seq Berry Development / Reads / ripe 3-33 alignments"
    description="read alignments"
    url="V_corymbosum_Aug_2015/berrydev_proc"
    foreground="0000ff"
    background="FFFFFF"
  />
  <file
    name="berrydev_proc/P3_ripe.bedgraph.gz"
    title="RNA-Seq Berry Development / Graph / ripe 3-33, coverage"
    description="coverage graph"
    url="V_corymbosum_Aug_2015/berrydev_proc"
    foreground="0000ff"
    background="FFFFFF"
  />
  <file
    name="berrydev_proc/P3_ripe.bed.gz"
    title="RNA-Seq Berry Development / Junctions / ripe 3-33, tophat junctions"
    description="Junctions predicted by TopHat"
    url="V_corymbosum_Aug_2015/berrydev_proc"
    show2tracks="False"
    foreground="0000ff"
    direction_type="arrow"
    label_field="score"
    background="FFFFFF"
  />
  <file
    name="berrydev_proc/P3_ripe.FJ.bed.gz"
    title="RNA-Seq Berry Development / FJ Juncs / ripe 3-33, LL junctions"
    description="Junctions predicted by Loraine Lab FindJunctions, single-mapping reads only"
    url="V_corymbosum_Aug_2015/berrydev_proc"
    show2tracks="False"
    foreground="0000ff"
    direction_type="arrow"
    label_field="score"
    background="FFFFFF"
  />
  <file
    name="berrydev_proc/P1_pink.bam"
    title="RNA-Seq Berry Development / Reads / pink 2-41 alignments"
    description="read alignments"
    url="V_corymbosum_Aug_2015/berrydev_proc"
    foreground="FF55FF"
    background="FFFFFF"
  />
  <file
    name="berrydev_proc/P1_pink.bedgraph.gz"
    title="RNA-Seq Berry Development / Graph / pink 2-41, coverage"
    description="coverage graph"
    url="V_corymbosum_Aug_2015/berrydev_proc"
    foreground="FF55FF"
    background="FFFFFF"
  />
  <file
    name="berrydev_proc/P1_pink.bed.gz"
    title="RNA-Seq Berry Development / Junctions / pink 2-41, tophat junctions"
    description="Junctions predicted by TopHat"
    url="V_corymbosum_Aug_2015/berrydev_proc"
    show2tracks="False"
    foreground="FF55FF"
    direction_type="arrow"
    label_field="score"
    background="FFFFFF"
  />
  <file
    name="berrydev_proc/P1_pink.FJ.bed.gz"
    title="RNA-Seq Berry Development / FJ Juncs / pink 2-41, LL junctions"
    description="Junctions predicted by Loraine Lab FindJunctions, single-mapping reads only"
    url="V_corymbosum_Aug_2015/berrydev_proc"
    show2tracks="False"
    foreground="FF55FF"
    direction_type="arrow"
    label_field="score"
    background="FFFFFF"
  />
  <file
    name="berrydev_proc/P2_pink.bam"
    title="RNA-Seq Berry Development / Reads / pink 2-42 alignments"
    description="read alignments"
    url="V_corymbosum_Aug_2015/berrydev_proc"
    foreground="FF55FF"
    background="FFFFFF"
  />
  <file
    name="berrydev_proc/P2_pink.bedgraph.gz"
    title="RNA-Seq Berry Development / Graph / pink 2-42, coverage"
    description="coverage graph"
    url="V_corymbosum_Aug_2015/berrydev_proc"
    foreground="FF55FF"
    background="FFFFFF"
  />
  <file
    name="berrydev_proc/P2_pink.bed.gz"
    title="RNA-Seq Berry Development / Junctions / pink 2-42, tophat junctions"
    description="Junctions predicted by TopHat"
    url="V_corymbosum_Aug_2015/berrydev_proc"
    show2tracks="False"
    foreground="FF55FF"
    direction_type="arrow"
    label_field="score"
    background="FFFFFF"
  />
  <file
    name="berrydev_proc/P2_pink.FJ.bed.gz"
    title="RNA-Seq Berry Development / FJ Juncs / pink 2-42, LL junctions"
    description="Junctions predicted by Loraine Lab FindJunctions, single-mapping reads only"
    url="V_corymbosum_Aug_2015/berrydev_proc"
    show2tracks="False"
    foreground="FF55FF"
    direction_type="arrow"
    label_field="score"
    background="FFFFFF"
  />
  <file
    name="berrydev_proc/P3_pink.bam"
    title="RNA-Seq Berry Development / Reads / pink 3-33 alignments"
    description="read alignments"
    url="V_corymbosum_Aug_2015/berrydev_proc"
    foreground="FF55FF"
    background="FFFFFF"
  />
  <file
    name="berrydev_proc/P3_pink.bedgraph.gz"
    title="RNA-Seq Berry Development / Graph / pink 3-33, coverage"
    description="coverage graph"
    url="V_corymbosum_Aug_2015/berrydev_proc"
    foreground="FF55FF"
    background="FFFFFF"
  />
  <file
    name="berrydev_proc/P3_pink.bed.gz"
    title="RNA-Seq Berry Development / Junctions / pink 3-33, tophat junctions"
    description="Junctions predicted by TopHat"
    url="V_corymbosum_Aug_2015/berrydev_proc"
    show2tracks="False"
    foreground="FF55FF"
    direction_type="arrow"
    label_field="score"
    background="FFFFFF"
  />
  <file
    name="berrydev_proc/P3_pink.FJ.bed.gz"
    title="RNA-Seq Berry Development / FJ Juncs / pink 3-33, LL junctions"
    description="Junctions predicted by Loraine Lab FindJunctions, single-mapping reads only"
    url="V_corymbosum_Aug_2015/berrydev_proc"
    show2tracks="False"
    foreground="FF55FF"
    direction_type="arrow"
    label_field="score"
    background="FFFFFF"
  />
  <file
    name="berrydev_proc/P1_green.bam"
    title="RNA-Seq Berry Development / Reads / green 2-41 alignments"
    description="read alignments"
    url="V_corymbosum_Aug_2015/berrydev_proc"
    foreground="006600"
    background="FFFFFF"
  />
  <file
    name="berrydev_proc/P1_green.bedgraph.gz"
    title="RNA-Seq Berry Development / Graph / green 2-41, coverage"
    description="coverage graph"
    url="V_corymbosum_Aug_2015/berrydev_proc"
    foreground="006600"
    background="FFFFFF"
  />
  <file
    name="berrydev_proc/P1_green.bed.gz"
    title="RNA-Seq Berry Development / Junctions / green 2-41, tophat junctions"
    description="Junctions predicted by TopHat"
    url="V_corymbosum_Aug_2015/berrydev_proc"
    show2tracks="False"
    foreground="006600"
    direction_type="arrow"
    label_field="score"
    background="FFFFFF"
  />
  <file
    name="berrydev_proc/P1_green.FJ.bed.gz"
    title="RNA-Seq Berry Development / FJ Juncs / green 2-41, LL junctions"
    description="Junctions predicted by Loraine Lab FindJunctions, single-mapping reads only"
    url="V_corymbosum_Aug_2015/berrydev_proc"
    show2tracks="False"
    foreground="006600"
    direction_type="arrow"
    label_field="score"
    background="FFFFFF"
  />
  <file
    name="berrydev_proc/P2_green.bam"
    title="RNA-Seq Berry Development / Reads / green 2-42 alignments"
    description="read alignments"
    url="V_corymbosum_Aug_2015/berrydev_proc"
    foreground="006600"
    background="FFFFFF"
  />
  <file
    name="berrydev_proc/P2_green.bedgraph.gz"
    title="RNA-Seq Berry Development / Graph / green 2-42, coverage"
    description="coverage graph"
    url="V_corymbosum_Aug_2015/berrydev_proc"
    foreground="006600"
    background="FFFFFF"
  />
  <file
    name="berrydev_proc/P2_green.bed.gz"
    title="RNA-Seq Berry Development / Junctions / green 2-42, tophat junctions"
    description="Junctions predicted by TopHat"
    url="V_corymbosum_Aug_2015/berrydev_proc"
    show2tracks="False"
    foreground="006600"
    direction_type="arrow"
    label_field="score"
    background="FFFFFF"
  />
  <file
    name="berrydev_proc/P2_green.FJ.bed.gz"
    title="RNA-Seq Berry Development / FJ Juncs / green 2-42, LL junctions"
    description="Junctions predicted by Loraine Lab FindJunctions, single-mapping reads only"
    url="V_corymbosum_Aug_2015/berrydev_proc"
    show2tracks="False"
    foreground="006600"
    direction_type="arrow"
    label_field="score"
    background="FFFFFF"
  />
  <file
    name="berrydev_proc/P3_green.bam"
    title="RNA-Seq Berry Development / Reads / green 3-33 alignments"
    description="read alignments"
    url="V_corymbosum_Aug_2015/berrydev_proc"
    foreground="006600"
    background="FFFFFF"
  />
  <file
    name="berrydev_proc/P3_green.bedgraph.gz"
    title="RNA-Seq Berry Development / Graph / green 3-33, coverage"
    description="coverage graph"
    url="V_corymbosum_Aug_2015/berrydev_proc"
    foreground="006600"
    background="FFFFFF"
  />
  <file
    name="berrydev_proc/P3_green.bed.gz"
    title="RNA-Seq Berry Development / Junctions / green 3-33, tophat junctions"
    description="Junctions predicted by TopHat"
    url="V_corymbosum_Aug_2015/berrydev_proc"
    show2tracks="False"
    foreground="006600"
    direction_type="arrow"
    label_field="score"
    background="FFFFFF"
  />
  <file
    name="berrydev_proc/P3_green.FJ.bed.gz"
    title="RNA-Seq Berry Development / FJ Juncs / green 3-33, LL junctions"
    description="Junctions predicted by Loraine Lab FindJunctions, single-mapping reads only"
    url="V_corymbosum_Aug_2015/berrydev_proc"
    show2tracks="False"
    foreground="006600"
    direction_type="arrow"
    label_field="score"
    background="FFFFFF"
  />
  <file
    name="berrydev_proc/P1_cup.bam"
    title="RNA-Seq Berry Development / Reads / cup 2-41 alignments"
    description="read alignments"
    url="V_corymbosum_Aug_2015/berrydev_proc"
    foreground="339966"
    background="FFFFFF"
  />
  <file
    name="berrydev_proc/P1_cup.bedgraph.gz"
    title="RNA-Seq Berry Development / Graph / cup 2-41, coverage"
    description="coverage graph"
    url="V_corymbosum_Aug_2015/berrydev_proc"
    foreground="339966"
    background="FFFFFF"
  />
  <file
    name="berrydev_proc/P1_cup.bed.gz"
    title="RNA-Seq Berry Development / Junctions / cup 2-41, tophat junctions"
    description="Junctions predicted by TopHat"
    url="V_corymbosum_Aug_2015/berrydev_proc"
    show2tracks="False"
    foreground="339966"
    direction_type="arrow"
    label_field="score"
    background="FFFFFF"
  />
  <file
    name="berrydev_proc/P1_cup.FJ.bed.gz"
    title="RNA-Seq Berry Development / FJ Juncs / cup 2-41, LL junctions"
    description="Junctions predicted by Loraine Lab FindJunctions, single-mapping reads only"
    url="V_corymbosum_Aug_2015/berrydev_proc"
    show2tracks="False"
    foreground="339966"
    direction_type="arrow"
    label_field="score"
    background="FFFFFF"
  />
  <file
    name="berrydev_proc/P2_cup.bam"
    title="RNA-Seq Berry Development / Reads / cup 2-42 alignments"
    description="read alignments"
    url="V_corymbosum_Aug_2015/berrydev_proc"
    foreground="339966"
    background="FFFFFF"
  />
  <file
    name="berrydev_proc/P2_cup.bedgraph.gz"
    title="RNA-Seq Berry Development / Graph / cup 2-42, coverage"
    description="coverage graph"
    url="V_corymbosum_Aug_2015/berrydev_proc"
    foreground="339966"
    background="FFFFFF"
  />
  <file
    name="berrydev_proc/P2_cup.bed.gz"
    title="RNA-Seq Berry Development / Junctions / cup 2-42, tophat junctions"
    description="Junctions predicted by TopHat"
    url="V_corymbosum_Aug_2015/berrydev_proc"
    show2tracks="False"
    foreground="339966"
    direction_type="arrow"
    label_field="score"
    background="FFFFFF"
  />
  <file
    name="berrydev_proc/P2_cup.FJ.bed.gz"
    title="RNA-Seq Berry Development / FJ Juncs / cup 2-42, LL junctions"
    description="Junctions predicted by Loraine Lab FindJunctions, single-mapping reads only"
    url="V_corymbosum_Aug_2015/berrydev_proc"
    show2tracks="False"
    foreground="339966"
    direction_type="arrow"
    label_field="score"
    background="FFFFFF"
  />
  <file
    name="berrydev_proc/P3_cup.bam"
    title="RNA-Seq Berry Development / Reads / cup 3-33 alignments"
    description="read alignments"
    url="V_corymbosum_Aug_2015/berrydev_proc"
    foreground="339966"
    background="FFFFFF"
  />
  <file
    name="berrydev_proc/P3_cup.bedgraph.gz"
    title="RNA-Seq Berry Development / Graph / cup 3-33, coverage"
    description="coverage graph"
    url="V_corymbosum_Aug_2015/berrydev_proc"
    foreground="339966"
    background="FFFFFF"
  />
  <file
    name="berrydev_proc/P3_cup.bed.gz"
    title="RNA-Seq Berry Development / Junctions / cup 3-33, tophat junctions"
    description="Junctions predicted by TopHat"
    url="V_corymbosum_Aug_2015/berrydev_proc"
    show2tracks="False"
    foreground="339966"
    direction_type="arrow"
    label_field="score"
    background="FFFFFF"
  />
  <file
    name="berrydev_proc/P3_cup.FJ.bed.gz"
    title="RNA-Seq Berry Development / FJ Juncs / cup 3-33, LL junctions"
    description="Junctions predicted by Loraine Lab FindJunctions, single-mapping reads only"
    url="V_corymbosum_Aug_2015/berrydev_proc"
    show2tracks="False"
    foreground="339966"
    direction_type="arrow"
    label_field="score"
    background="FFFFFF"
  />
  <file
    name="berrydev_proc/P1_pad.bam"
    title="RNA-Seq Berry Development / Reads / pad 2-41 alignments"
    description="read alignments"
    url="V_corymbosum_Aug_2015/berrydev_proc"
    foreground="00FF00"
    background="FFFFFF"
  />
  <file
    name="berrydev_proc/P1_pad.bedgraph.gz"
    title="RNA-Seq Berry Development / Graph / pad 2-41, coverage"
    description="coverage graph"
    url="V_corymbosum_Aug_2015/berrydev_proc"
    foreground="00FF00"
    background="FFFFFF"
  />
  <file
    name="berrydev_proc/P1_pad.bed.gz"
    title="RNA-Seq Berry Development / Junctions / pad 2-41, tophat junctions"
    description="Junctions predicted by TopHat"
    url="V_corymbosum_Aug_2015/berrydev_proc"
    show2tracks="False"
    foreground="00FF00"
    direction_type="arrow"
    label_field="score"
    background="FFFFFF"
  />
  <file
    name="berrydev_proc/P1_pad.FJ.bed.gz"
    title="RNA-Seq Berry Development / FJ Juncs / pad 2-41, LL junctions"
    description="Junctions predicted by Loraine Lab FindJunctions, single-mapping reads only"
    url="V_corymbosum_Aug_2015/berrydev_proc"
    show2tracks="False"
    foreground="00FF00"
    direction_type="arrow"
    label_field="score"
    background="FFFFFF"
  />
  <file
    name="berrydev_proc/P3_pad_a.bam"
    title="RNA-Seq Berry Development / Reads / pad 3-33a alignments"
    description="read alignments"
    url="V_corymbosum_Aug_2015/berrydev_proc"
    foreground="00FF00"
    background="FFFFFF"
  />
  <file
    name="berrydev_proc/P3_pad_a.bedgraph.gz"
    title="RNA-Seq Berry Development / Graph / pad 3-33a, coverage"
    description="coverage graph"
    url="V_corymbosum_Aug_2015/berrydev_proc"
    foreground="00FF00"
    background="FFFFFF"
  />
  <file
    name="berrydev_proc/P3_pad_a.bed.gz"
    title="RNA-Seq Berry Development / Junctions / pad 3-33a, tophat junctions"
    description="Junctions predicted by TopHat"
    url="V_corymbosum_Aug_2015/berrydev_proc"
    show2tracks="False"
    foreground="00FF00"
    direction_type="arrow"
    label_field="score"
    background="FFFFFF"
  />
  <file
    name="berrydev_proc/P3_pad_a.FJ.bed.gz"
    title="RNA-Seq Berry Development / FJ Juncs / pad 3-33a, LL junctions"
    description="Junctions predicted by Loraine Lab FindJunctions, single-mapping reads only"
    url="V_corymbosum_Aug_2015/berrydev_proc"
    show2tracks="False"
    foreground="00FF00"
    direction_type="arrow"
    label_field="score"
    background="FFFFFF"
  />
  <file
    name="berrydev_proc/P3_pad_b.bam"
    title="RNA-Seq Berry Development / Reads / pad 3-33b alignments"
    description="read alignments"
    url="V_corymbosum_Aug_2015/berrydev_proc"
    foreground="00FF00"
    background="FFFFFF"
  />
  <file
    name="berrydev_proc/P3_pad_b.bedgraph.gz"
    title="RNA-Seq Berry Development / Graph / pad 3-33b, coverage"
    description="coverage graph"
    url="V_corymbosum_Aug_2015/berrydev_proc"
    foreground="00FF00"
    background="FFFFFF"
  />
  <file
    name="berrydev_proc/P3_pad_b.bed.gz"
    title="RNA-Seq Berry Development / Junctions / pad 3-33b, tophat junctions"
    description="Junctions predicted by TopHat"
    url="V_corymbosum_Aug_2015/berrydev_proc"
    show2tracks="False"
    foreground="00FF00"
    direction_type="arrow"
    label_field="score"
    background="FFFFFF"
  />
  <file
    name="berrydev_proc/P3_pad_b.FJ.bed.gz"
    title="RNA-Seq Berry Development / FJ Juncs / pad 3-33b, LL junctions"
    description="Junctions predicted by Loraine Lab FindJunctions, single-mapping reads only"
    url="V_corymbosum_Aug_2015/berrydev_proc"
    show2tracks="False"
    foreground="00FF00"
    direction_type="arrow"
    label_field="score"
    background="FFFFFF"
  />
</files>
