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<html> <body> <h1>Anopheles gambiae (Oct 2006) mosquito (AgamP3/anoGam3) genome assembly</h1> <p> The files listed below are formatted for visualization in the Integrated Genome Browser, available from <a href="https://bioviz.org">BioViz.org</a>. </p> <p> Annotation (bed) files were downloaded from the UCSC Genome Bioinformatics Table Browser and Ensembl Biomart Metazoa Database. Each file is named for its corresponding table in the UCSC Genome database. See the <a href="annots.xml">annots.xml</a> meta-data file in this directory for details. </p> <p> Files with extension .gz were compressed and indexed using bgzip and tabix tools from <a href="https://www.htslib.org">htslib.org</a>. </p> <p> The file named A_gambiae_Oct_2006.2bit contains sequence data and is from the UCSC Genome Bioinformatics Web site. To convert a .2bit to fasta, use twoBitToFa. The file <a href="genome.txt">genome.txt</a> lists sequences and their sizes and was made from A_gambiae_Oct_2006.2bit sequence file using twoBitInfo. </p> <p> Both twoBitInfo and twoBitToFa are available from <a href="http://hgdownload.cse.ucsc.edu/admin/exe/">http://hgdownload.cse.ucsc.edu/admin/exe/</a>. </p> </body> </html>
Name | Last modified | Size | Description | |
---|---|---|---|---|
Parent Directory | - | |||
A_gambiae_Oct_2006.2bit | 18-Mar-2019 19:57 | 65M | Sequence data in blat 2bit format | |
![]() | A_gambiae_Oct_2006_ensGene.bed.gz | 18-Mar-2019 19:57 | 721K | Annotation or junction file |
A_gambiae_Oct_2006_ensGene.bed.gz.tbi | 18-Mar-2019 19:57 | 31K | Tabix index file | |
annots.xml | 10-Sep-2019 17:20 | 393 | Annotation and data file list | |
genome.txt | 18-Mar-2019 19:57 | 182K | Chromosome lengths and assembly information |