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<h1>Ailuropoda melanoleuca (Dec 2009) giant panda (ailMel1/BGI-Shenzhen AilMel 1.0) genome assembly</h1>
<p>
The files listed below are formatted for visualization in the Integrated Genome
Browser, available from <a href="https://bioviz.org">BioViz.org</a>.
</p>
<p>
Annotation (bed) and alignment (psl) files (if available) were downloaded from the UCSC Genome
Bioinformatics Table Browser. Each file is named for its corresponding table in the
UCSC Genome database. See the <a href="annots.xml">annots.xml</a> meta-data file in
this directory for details.
</p>
<p>
Files with extension .gz were compressed and indexed using bgzip and
tabix tools from <a href="https://www.htslib.org">htslib.org</a>.
</p>
<p>
The file named A_melanoleuca_Dec_2009.2bit contains sequence data and is from the UCSC Genome
Bioinformatics Web site. To convert a .2bit to fasta, use twoBitToFa. The file
<a href="genome.txt">genome.txt</a> lists sequences and their sizes and was made from 
A_melanoleuca_Dec_2009.2bit sequence file using twoBitInfo.
</p>
<p>
Both twoBitInfo and twoBitToFa are
available from <a href="http://hgdownload.cse.ucsc.edu/admin/exe/">http://hgdownload.cse.ucsc.edu/admin/exe/</a>.
</p>
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[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[ ]annots.xml2023-06-16 13:30 1.1KAnnotation and data file list
[ ]A_melanoleuca_Dec_2009_ensGene.bed.gz2023-06-16 13:30 1.3MAnnotation or junction file
[TXT]genome.txt2023-06-16 13:30 1.2MChromosome lengths and assembly information
[ ]A_melanoleuca_Dec_2009_all_est.psl.gz2023-06-16 13:30 176 PSL (alignments) blat output file
[ ]A_melanoleuca_Dec_2009_all_mrna.psl.gz2023-06-16 13:30 9.1KPSL (alignments) blat output file
[ ]A_melanoleuca_Dec_2009.2bit2023-06-16 13:30 577MSequence data in blat 2bit format
[ ]A_melanoleuca_Dec_2009_all_est.psl.gz.tbi2023-06-16 13:30 135 Tabix index file
[ ]A_melanoleuca_Dec_2009_all_mrna.psl.gz.tbi2023-06-16 13:30 2.5KTabix index file
[ ]A_melanoleuca_Dec_2009_ensGene.bed.gz.tbi2023-06-16 13:30 189KTabix index file
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