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<h1>Apis mellifera (honeybee) Jan 2005 (apiMel2/Baylor College of Medicine HGSC v.Amel_2.0 ) genome assembly</h1>
<p>
The files listed below are formatted for visualization in the Integrated Genome
Browser, available from <a href="https://bioviz.org">BioViz.org</a>.
</p>
<p>
Annotation (bed) and alignment (psl) files (if available) were downloaded from the UCSC Genome
Bioinformatics Table Browser. Each file is named for its corresponding table in the
UCSC Genome database. See the <a href="annots.xml">annots.xml</a> meta-data file in
this directory for details.
</p>
<p>
Files with extension .gz were compressed and indexed using bgzip and
tabix tools from <a href="https://www.htslib.org">htslib.org</a>.
</p>
<p>
The file named A_mellifera_Jan_2005.2bit contains sequence data and is from the UCSC Genome
Bioinformatics Web site. To convert a .2bit to fasta, use twoBitToFa. The file
<a href="genome.txt">genome.txt</a> lists sequences and their sizes and was made from 
A_mellifera_Jan_2005.2bit sequence file using twoBitInfo.
</p>
<p>
Both twoBitInfo and twoBitToFa are
available from <a href="http://hgdownload.cse.ucsc.edu/admin/exe/">http://hgdownload.cse.ucsc.edu/admin/exe/</a>.
</p>
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[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[ ]A_mellifera_Jan_2005.2bit2023-06-16 13:18 123MSequence data in blat 2bit format
[ ]A_mellifera_Jan_2005_all_mrna.psl.gz2023-06-16 13:18 6.4MPSL (alignments) blat output file
[ ]A_mellifera_Jan_2005_all_est.psl.gz2023-06-16 13:18 2.8MPSL (alignments) blat output file
[ ]A_mellifera_Jan_2005_modelRefGene.bed.gz2023-06-16 13:18 492KAnnotation or junction file
[ ]A_mellifera_Jan_2005_all_mrna.psl.gz.tbi2023-06-16 13:18 116KTabix index file
[ ]A_mellifera_Jan_2005_all_est.psl.gz.tbi2023-06-16 13:18 77KTabix index file
[ ]A_mellifera_Jan_2005_modelRefGene.bed.gz.tbi2023-06-16 13:18 59KTabix index file
[ ]annots.xml2023-06-16 13:18 1.1KAnnotation and data file list
[TXT]genome.txt2023-06-16 13:18 273 Chromosome lengths and assembly information
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