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<h1>C. elegans Oct 2010 (WS220/ce10) genome assembly</h1>
<p>
The files listed below are formatted for visualization in the Integrated Genome
Browser, available from <a href="https://bioviz.org">BioViz.org</a>.
</p>
<p>
Annotation (bed) and alignment (psl) files (if available) were downloaded from the UCSC Genome
Bioinformatics Table Browser. Each file is named for its corresponding table in the
UCSC Genome database. See the <a href="annots.xml">annots.xml</a> meta-data file in
this directory for details.
</p>
<p>
Files with extension .gz were compressed and indexed using bgzip and
tabix tools from <a href="https://www.htslib.org">htslib.org</a>.
</p>
<p>
The file named C_elegans_Oct_2010.2bit contains sequence data and is from the UCSC Genome
Bioinformatics Web site. To convert a .2bit to fasta, use twoBitToFa. The file
<a href="genome.txt">genome.txt</a> lists sequences and their sizes and was made from 
C_elegans_Oct_2010.2bit sequence file using twoBitInfo.
</p>
<p>
Both twoBitInfo and twoBitToFa are
available from <a href="http://hgdownload.cse.ucsc.edu/admin/exe/">http://hgdownload.cse.ucsc.edu/admin/exe/</a>.
</p>
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[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[ ]ce10-blacklist.v2.bed.gz2023-06-16 13:18 1.0KAnnotation or junction file
[ ]C_elegans_Oct_2010_refGene.bed.gz2023-06-16 13:18 1.5MData from UCSC refGene table
[ ]ce10-blacklist.v2.bed.gz.tbi2023-06-16 13:18 1.3KTabix index file
[TXT]genome.txt2023-06-16 13:18 99 Chromosome lengths and assembly information
[ ]C_elegans_Oct_2010_all_mrna.psl.gz2023-06-16 13:18 209KPSL (alignments) blat output file
[ ]C_elegans_Oct_2010_refGene.bed.gz.tbi2023-06-16 13:18 60KTabix index file
[ ]C_elegans_Oct_2010_all_est.psl.gz2023-06-16 13:18 13MPSL (alignments) blat output file
[ ]C_elegans_Oct_2010.2bit2023-06-16 13:18 25MSequence data in blat 2bit format
[ ]C_elegans_Oct_2010_all_mrna.psl.gz.tbi2023-06-16 13:18 17KTabix index file
[ ]annots.xml2023-06-16 13:18 1.4KAnnotation and data file list
[ ]C_elegans_Oct_2010_all_est.psl.gz.tbi2023-06-16 13:18 67KTabix index file
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