Cavia porcellus (Feb 2008) guinea pig (cavPor3) genome assembly

The files listed below are formatted for visualization in the Integrated Genome Browser, available from BioViz.org.

Annotation (bed) and alignment (psl) files (if available) were downloaded from the UCSC Genome Bioinformatics Table Browser. Each file is named for its corresponding table in the UCSC Genome database. See the annots.xml meta-data file in this directory for details.

Files with extension .gz were compressed and indexed using bgzip and tabix tools from htslib.org.

The file named C_porcellus_Feb_2008.2bit contains sequence data and is from the UCSC Genome Bioinformatics Web site. To convert a .2bit to fasta, use twoBitToFa. The file genome.txt lists sequences and their sizes and was made from C_porcellus_Feb_2008.2bit sequence file using twoBitInfo.

Both twoBitInfo and twoBitToFa are available from http://hgdownload.cse.ucsc.edu/admin/exe/.

	Name	Last modified	Size	Description
	Parent Directory		-
	C_porcellus_Feb_2008_refGene.bed.gz.tbi	2023-06-16 14:24	8.5K	Tabix index file
	C_porcellus_Feb_2008_all_mrna.psl.gz.tbi	2023-06-16 14:24	11K	Tabix index file
	C_porcellus_Feb_2008_all_est.psl.gz.tbi	2023-06-16 14:24	115K	Tabix index file
	C_porcellus_Feb_2008_all_mrna.psl.gz	2023-06-16 14:24	60K	PSL (alignments) blat output file
	C_porcellus_Feb_2008_all_est.psl.gz	2023-06-16 14:24	1.0M	PSL (alignments) blat output file
	C_porcellus_Feb_2008_refGene.bed.gz	2023-06-16 14:24	30K	Data from UCSC refGene table
	genome.txt	2023-06-16 14:24	60K	Chromosome lengths and assembly information
	annots.xml	2025-03-11 10:01	1.2K	Annotation and data file list