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<h1>Capitella teleta Jan 2013 (Capca1) genome assembly</h1>
<p>
The files listed below are formatted for visualization in the Integrated Genome
Browser, available from <a href="https://bioviz.org">BioViz.org</a>.
</p>
<p>
Annotation features (gff) files were downloaded from NCBI Genome (<a href="ncbi.nlm.nih.gov/datasets/genome/">ncbi.nlm.nih.gov/datasets/genome/</a>). See the <a href="annots.xml">annots.xml</a> meta-data file in this directory for details.
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<p>
Files with extension .gz were compressed and indexed using bgzip and
tabix tools from <a href="https://www.htslib.org">htslib.org</a>.
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<p>
The file named C_teleta_Jan_2013.2bit contains sequence data. It was originally downloaded in fasta format from NCBI Genome and then converted to 2bit by running the faToTwoBit program provided by UCSC. The file <a href="genome.txt">genome.txt</a> lists sequences and their sizes. It was made from the C_teleta_Jan_2013.2bit sequence file using the twoBitInfo program.
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<p>
Both twoBitInfo and faToTwoBit are available from <a href="http://hgdownload.cse.ucsc.edu/admin/exe/">http://hgdownload.cse.ucsc.edu/admin/exe/</a>.
</p>
<p>
More information about this genome assembly and its gene models can be found in the following publication: <a href="doi.org/10.1038/nature11696">doi.org/10.1038/nature11696</a>.
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[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[ ]C_teleta_Jan_2013.2bit2024-12-19 14:35 90MSequence data in blat 2bit format
[ ]C_teleta_Jan_2013_genBank.bed.gz2024-12-19 14:35 1.3MAnnotation or junction file
[ ]C_teleta_Jan_2013_genBank.bed.gz.tbi2024-12-19 14:35 141KTabix index file
[ ]annots.xml2024-12-19 14:35 405 Annotation and data file list
[TXT]genome.txt2024-12-19 14:35 329KChromosome lengths and assembly information
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