Daphnia pulex (Sep 2016) water flea (PA42 v3.0) genome assembly
The files listed below are formatted for visualization in the Integrated Genome Browser, available from BioViz.org.
The file named D_pulex_Sep_2016.2bit contains sequence data from https://sra-download.ncbi.nlm.nih.gov/traces/wgs03/wgs_aux/FL/TH/FLTH01/FLTH01.1.fsa_nt.gz. To convert a .2bit to fasta, use twoBitToFa. The file genome.txt lists sequences and their sizes and was made from D_pulex_Sep_2016.2bit sequence file using twoBitInfo. Both twoBitInfo and twoBitToFa are available from http://hgdownload.cse.ucsc.edu/admin/exe/.
The file named D_pulex_Sep_2016.bed.gz contains gene models obtained from https://www.g3journal.org/highwire/filestream/483384/field_highwire_adjunct_files/3/File_S3.zip. Files with extension .gz were compressed and indexed using bgzip and tabix tools from htslib.org.
Data associated with paper: A New Reference Genome Assembly for the Microcrustacean Daphnia pulex
![[ICO]](/styling/icons/blank.svg){kind=icon} | Name | Last modified | Size | Description |
|---|---|---|---|---|
![[PARENTDIR]](/styling/icons/glyphicon-circle-arrow-up.svg){kind=icon} | Parent Directory | - | ||
![[ ]](/styling/icons/glyphicon-file.svg){kind=icon} | D_pulex_Sep_2016.bed.gz.tbi | 2023-06-16 14:32 | 37K | Tabix index file |
![[ ]](/icons/compressed.gif){kind=icon} | D_pulex_Sep_2016.bed.gz | 2023-06-16 14:32 | 896K | Annotation or junction file |
| genome.txt | 2023-06-16 14:32 | 34K | Chromosome lengths and assembly information |
| D_pulex_Sep_2016.2bit | 2023-06-16 14:32 | 37M | Sequence data in blat 2bit format |
| annots.xml | 2023-06-16 14:32 | 522 | Annotation and data file list |