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<h1>Equus caballus (Sep 2007) horse (equCab2) genome assembly</h1>
<p>
The files listed below are formatted for visualization in the Integrated Genome
Browser, available from <a href="https://bioviz.org">BioViz.org</a>.
</p>
<p>
Annotation (bed) and alignment (psl) files (if available) were downloaded from the UCSC Genome
Bioinformatics Table Browser. Each file is named for its corresponding table in the
UCSC Genome database. See the <a href="annots.xml">annots.xml</a> meta-data file in
this directory for details.
</p>
<p>
Files with extension .gz were compressed and indexed using bgzip and
tabix tools from <a href="https://www.htslib.org">htslib.org</a>.
</p>
<p>
The file named E_caballus_Sep_2007.2bit contains sequence data and is from the UCSC Genome
Bioinformatics Web site. To convert a .2bit to fasta, use twoBitToFa. The file
<a href="genome.txt">genome.txt</a> lists sequences and their sizes and was made from 
E_caballus_Sep_2007.2bit sequence file using twoBitInfo.
</p>
<p>
Both twoBitInfo and twoBitToFa are
available from <a href="http://hgdownload.cse.ucsc.edu/admin/exe/">http://hgdownload.cse.ucsc.edu/admin/exe/</a>.
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[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[ ]annots.xml2023-06-16 13:24 1.0KAnnotation and data file list
[TXT]genome.txt2023-06-16 13:24 502 Chromosome lengths and assembly information
[ ]E_caballus_Sep_2007_refGene.bed.gz2023-06-16 13:24 67KData from UCSC refGene table
[ ]E_caballus_Sep_2007_all_est.psl.gz2023-06-16 13:24 1.5MPSL (alignments) blat output file
[ ]E_caballus_Sep_2007_all_mrna.psl.gz2023-06-16 13:24 1.4MPSL (alignments) blat output file
[ ]E_caballus_Sep_2007.2bit2023-06-16 13:24 617MSequence data in blat 2bit format
[ ]E_caballus_Sep_2007_all_est.psl.gz.tbi2023-06-16 13:24 126KTabix index file
[ ]E_caballus_Sep_2007_all_mrna.psl.gz.tbi2023-06-16 13:24 168KTabix index file
[ ]E_caballus_Sep_2007_refGene.bed.gz.tbi2023-06-16 13:24 15KTabix index file
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