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<html> <body> <h1>Glycine max (Jan 2014) version 2.0 genome assembly</h1> <p> The files listed below are formatted for visualization in the Integrated Genome Browser, available from <a href="https://bioviz.org">BioViz.org</a>. </p> <p> The gene model annotation file (G_max_Jan_2014.bed.gz) was made from GFF and gene information files downloaded in Feb. 2015 from JGI. </p> <p> The file named G_max_Jan_2014.2bit contains sequence data. It was made from fasta file also downloaded from Phytozome. To convert it back to fasta, use twoBitToFa. </p> The file <a href="genome.txt">genome.txt</a> lists sequences and their sizes and was made from the 2bit sequence file using twoBitInfo. </p> <p> For more information, contact <a href="http://www.lorainelab.org">Ann Loraine</a>. </p> <p> You can get twoBitInfo, twoBitToFa, faToTwoBit, and related programs from <a href="http://hgdownload.cse.ucsc.edu/admin/exe/">http://hgdownload.cse.ucsc.edu/admin/exe/</a>. </p> </body> </html>
Name | Last modified | Size | Description | |
---|---|---|---|---|
Parent Directory | - | |||
G_max_Jan_2014.2bit | 2023-06-16 13:36 | 233M | Sequence data in blat 2bit format | |
G_max_Jan_2014.bed.gz | 2023-06-16 13:36 | 4.0M | Annotation or junction file | |
G_max_Jan_2014.bed.gz.tbi | 2023-06-16 13:36 | 330K | Tabix index file | |
annots.xml | 2023-06-16 13:36 | 412 | Annotation and data file list | |
genome.txt | 2023-06-16 13:36 | 22K | Chromosome lengths and assembly information |