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<h1>Homo sapiens (Dec 2013) human being (GRCh38/hg38) genome assembly</h1>
<p>
The files listed below are formatted for visualization in the Integrated Genome
Browser, available from <a href="https://bioviz.org">BioViz.org</a>.
</p>
<p>
Annotation (bed) and alignment (psl) files (if available) were downloaded from the UCSC Genome
Bioinformatics Table Browser. Each file is named for its corresponding table in the
UCSC Genome database. See the <a href="annots.xml">annots.xml</a> meta-data file in
this directory for details.
</p>
<p>
Files with extension .gz were compressed and indexed using bgzip and
tabix tools from <a href="https://www.htslib.org">htslib.org</a>.
</p>
<p>
The file named H_sapiens_Dec_2013.2bit contains sequence data and is from the UCSC Genome
Bioinformatics Web site. To convert a .2bit to fasta, use twoBitToFa. The file
<a href="genome.txt">genome.txt</a> lists sequences and their sizes and was made from 
H_sapiens_Dec_2013.2bit sequence file using twoBitInfo.
</p>
<p>
Both twoBitInfo and twoBitToFa are
available from <a href="http://hgdownload.cse.ucsc.edu/admin/exe/">http://hgdownload.cse.ucsc.edu/admin/exe/</a>.
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[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[DIR]UCSCTracks/2023-06-16 13:59 -  
[ ]annots.xml2023-06-16 13:59 4.4KAnnotation and data file list
[ ]H_sapiens_Dec_2013_ncbiRefSeq.bed.gz2023-06-16 13:59 7.0MAnnotation or junction file
[ ]H_sapiens_Dec_2013_ncbiRefSeqCurated.bed.gz2023-06-16 14:01 3.7MAnnotation or junction file
[ ]H_sapiens_Dec_2013_snp153Common.bed.gz2023-06-16 13:59 153MAnnotation or junction file
[ ]chess3.0.GRCh38.p12.bed.gz2023-06-16 13:59 9.4MAnnotation or junction file
[ ]hg38-blacklist.v2.bed.gz2023-06-16 13:59 5.8KAnnotation or junction file
[TXT]genome.txt2023-06-16 13:59 15KChromosome lengths and assembly information
[ ]cytoBand.cyt2023-06-16 13:59 44KCytobands file
[ ]H_sapiens_Dec_2013_refGene.bed.gz2023-06-16 13:59 3.9MData from UCSC refGene table
[ ]H_sapiens_Dec_2013_all_est.psl.gz2023-06-16 14:01 415MPSL (alignments) blat output file
[ ]H_sapiens_Dec_2013_all_mrna.psl.gz2023-06-16 14:01 164MPSL (alignments) blat output file
[ ]H_sapiens_Dec_2013.2bit2023-06-16 13:59 809MSequence data in blat 2bit format
[ ]H_sapiens_Dec_2013_all_est.psl.gz.tbi2023-06-16 13:59 1.4MTabix index file
[ ]H_sapiens_Dec_2013_all_mrna.psl.gz.tbi2023-06-16 13:59 1.6MTabix index file
[ ]H_sapiens_Dec_2013_ncbiRefSeq.bed.gz.tbi2023-06-16 13:59 158KTabix index file
[ ]H_sapiens_Dec_2013_ncbiRefSeqCurated.bed.gz.tbi2023-06-16 13:59 127KTabix index file
[ ]H_sapiens_Dec_2013_refGene.bed.gz.tbi2023-06-16 14:01 126KTabix index file
[ ]H_sapiens_Dec_2013_snp153Common.bed.gz.tbi2023-06-16 13:59 1.6MTabix index file
[ ]chess3.0.GRCh38.p12.bed.gz.tbi2023-06-16 14:01 216KTabix index file
[ ]hg38-blacklist.v2.bed.gz.tbi2023-06-16 13:59 10KTabix index file
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