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<h1>Hydra vulgaris (Apr 2024) Swiftwater hydra (HydraT2T_AEP) genome assembly</h1>
<p>
The files listed below are formatted for visualization in the Integrated Genome
Browser, available from <a href="https://bioviz.org">BioViz.org</a>.
</p>
<p>
Annotation features (gff) files were downloaded from NCBI Genome (<a href="ncbi.nlm.nih.gov/datasets/genome/">ncbi.nlm.nih.gov/datasets/genome/</a>). See the <a href="annots.xml">annots.xml</a> meta-data file in this directory for details.
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<p>
Files with extension .gz were compressed and indexed using bgzip and
tabix tools from <a href="https://www.htslib.org">htslib.org</a>.
</p>
<p>
The file named H_vulgaris_Apr_2024.2bit contains sequence data. It was originally downloaded in fasta format from NCBI Genome and then converted to 2bit by running the faToTwoBit program provided by UCSC. The file <a href="genome.txt">genome.txt</a> lists sequences and their sizes. It was made from the H_vulgaris_Apr_2024.2bit sequence file using the twoBitInfo program.
</p>
<p>
Both twoBitInfo and faToTwoBit are available from <a href="http://hgdownload.cse.ucsc.edu/admin/exe/">http://hgdownload.cse.ucsc.edu/admin/exe/</a>.
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[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[ ]H_vulgaris_Apr_2024.2bit2024-12-19 14:35 279MSequence data in blat 2bit format
[ ]H_vulgaris_Apr_2024_ncbiRefSeq.bed.gz2024-12-19 14:35 1.8MAnnotation or junction file
[ ]H_vulgaris_Apr_2024_ncbiRefSeq.bed.gz.tbi2024-12-19 14:35 82KTabix index file
[ ]annots.xml2024-12-19 14:35 396 Annotation and data file list
[TXT]genome.txt2024-12-19 14:35 315 Chromosome lengths and assembly information
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