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<h1>Loxodonta africana (Jul 2009) elephant (loxAfr3) genome assembly</h1>
<p>
The files listed below are formatted for visualization in the Integrated Genome
Browser, available from <a href="https://bioviz.org">BioViz.org</a>.
</p>
<p>
Annotation (bed) and alignment (psl) files (if available) were downloaded from the UCSC Genome
Bioinformatics Table Browser. Each file is named for its corresponding table in the
UCSC Genome database. See the <a href="annots.xml">annots.xml</a> meta-data file in
this directory for details.
</p>
<p>
Files with extension .gz were compressed and indexed using bgzip and
tabix tools from <a href="https://www.htslib.org">htslib.org</a>.
</p>
<p>
The file named L_africana_Jul_2009.2bit contains sequence data and is from the UCSC Genome
Bioinformatics Web site. To convert a .2bit to fasta, use twoBitToFa. The file
<a href="genome.txt">genome.txt</a> lists sequences and their sizes and was made from 
L_africana_Jul_2009.2bit sequence file using twoBitInfo.
</p>
<p>
Both twoBitInfo and twoBitToFa are
available from <a href="http://hgdownload.cse.ucsc.edu/admin/exe/">http://hgdownload.cse.ucsc.edu/admin/exe/</a>.
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[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[ ]L_africana_Jul_2009_ensGene.bed.gz.tbi2023-06-16 13:48 209KTabix index file
[ ]L_africana_Jul_2009_all_mrna.psl.gz.tbi2023-06-16 13:48 1.3KTabix index file
[ ]L_africana_Jul_2009.2bit2023-06-16 13:48 800MSequence data in blat 2bit format
[ ]L_africana_Jul_2009_all_mrna.psl.gz2023-06-16 13:48 1.9KPSL (alignments) blat output file
[TXT]genome.txt2023-06-16 13:48 44KChromosome lengths and assembly information
[ ]L_africana_Jul_2009_ensGene.bed.gz2023-06-16 13:48 1.5MAnnotation or junction file
[ ]annots.xml2023-06-16 13:48 709 Annotation and data file list
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