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<h1>Mus musculus (Feb 2006) mouse (NCBI36/mm8) genome assembly</h1>
<p>
The files listed below are formatted for visualization in the Integrated Genome
Browser, available from <a href="https://bioviz.org">BioViz.org</a>.
</p>
<p>
Annotation (bed) and alignment (psl) files (if available) were downloaded from the UCSC Genome
Bioinformatics Table Browser. Each file is named for its corresponding table in the
UCSC Genome database. See the <a href="annots.xml">annots.xml</a> meta-data file in
this directory for details.
</p>
<p>
Files with extension .gz were compressed and indexed using bgzip and
tabix tools from <a href="https://www.htslib.org">htslib.org</a>.
</p>
<p>
The file named M_musculus_Feb_2006.2bit contains sequence data and is from the UCSC Genome
Bioinformatics Web site. To convert a .2bit to fasta, use twoBitToFa. The file
<a href="genome.txt">genome.txt</a> lists sequences and their sizes and was made from 
M_musculus_Feb_2006.2bit sequence file using twoBitInfo.
</p>
<p>
Both twoBitInfo and twoBitToFa are
available from <a href="http://hgdownload.cse.ucsc.edu/admin/exe/">http://hgdownload.cse.ucsc.edu/admin/exe/</a>.
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[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[TXT]genome.txt2023-06-16 13:34 564 Chromosome lengths and assembly information
[ ]annots.xml2023-06-16 13:34 1.0KAnnotation and data file list
[ ]M_musculus_Feb_2006_refGene.bed.gz.tbi2023-06-16 13:34 177KTabix index file
[ ]M_musculus_Feb_2006_all_mrna.psl.gz.tbi2023-06-16 13:34 480KTabix index file
[ ]M_musculus_Feb_2006_all_est.psl.gz.tbi2023-06-16 13:34 1.0MTabix index file
[ ]M_musculus_Feb_2006_refGene.bed.gz2023-06-16 13:34 2.2MData from UCSC refGene table
[ ]M_musculus_Feb_2006_all_mrna.psl.gz2023-06-16 13:34 13MPSL (alignments) blat output file
[ ]M_musculus_Feb_2006_all_est.psl.gz2023-06-16 13:34 185MPSL (alignments) blat output file
[ ]M_musculus_Feb_2006.2bit2023-06-16 13:34 664MSequence data in blat 2bit format
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