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<h1>Mus musculus (Jul 2007) mouse (NCBI37/mm9) genome assembly</h1>
<p>
The files listed below are formatted for visualization in the Integrated Genome
Browser, available from <a href="https://bioviz.org">BioViz.org</a>.
</p>
<p>
Annotation (bed) and alignment (psl) files (if available) were downloaded from the UCSC Genome
Bioinformatics Table Browser. Each file is named for its corresponding table in the
UCSC Genome database. See the <a href="annots.xml">annots.xml</a> meta-data file in
this directory for details.
</p>
<p>
Files with extension .gz were compressed and indexed using bgzip and
tabix tools from <a href="https://www.htslib.org">htslib.org</a>.
</p>
<p>
The file named M_musculus_Jul_2007.2bit contains sequence data and is from the UCSC Genome
Bioinformatics Web site. To convert a .2bit to fasta, use twoBitToFa. The file
<a href="genome.txt">genome.txt</a> lists sequences and their sizes and was made from 
M_musculus_Jul_2007.2bit sequence file using twoBitInfo.
</p>
<p>
Both twoBitInfo and twoBitToFa are
available from <a href="http://hgdownload.cse.ucsc.edu/admin/exe/">http://hgdownload.cse.ucsc.edu/admin/exe/</a>.
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[ICO]NameLast modifiedSizeDescription
[DIR]Parent Directory  -  
[   ]M_musculus_Jul_2007_all_mrna.psl.gz27-Sep-2018 13:53 12MPSL (alignments) blat output file
[   ]M_musculus_Jul_2007_refGene.bed.gz27-Sep-2018 13:53 2.1MData from UCSC refGene table
[TXT]annots.xml27-Sep-2018 13:53 1.0KAnnotation and data file list
[TXT]genome.txt27-Sep-2018 13:53 584 Chromosome lengths and assembly information
[   ]M_musculus_Jul_2007_all_est.psl.gz.tbi27-Sep-2018 13:53 1.0MTabix index file
[   ]M_musculus_Jul_2007_all_mrna.psl.gz.tbi27-Sep-2018 13:53 466KTabix index file
[   ]M_musculus_Jul_2007.2bit27-Sep-2018 13:54 680MSequence data in blat 2bit format
[   ]M_musculus_Jul_2007_all_est.psl.gz27-Sep-2018 13:54 177MPSL (alignments) blat output file
[   ]M_musculus_Jul_2007_refGene.bed.gz.tbi27-Sep-2018 13:54 193KTabix index file
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