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<h1>Ovis aries (Feb 2010) sheep (ISGC Ovis_aries_1/oviAri1) genome assembly</h1>
<p>
The files listed below are formatted for visualization in the Integrated Genome
Browser, available from <a href="https://bioviz.org">BioViz.org</a>.
</p>
<p>
Annotation (bed) and alignment (psl) files (if available) were downloaded from the UCSC Genome
Bioinformatics Table Browser. Each file is named for its corresponding table in the
UCSC Genome database. See the <a href="annots.xml">annots.xml</a> meta-data file in
this directory for details.
</p>
<p>
Files with extension .gz were compressed and indexed using bgzip and
tabix tools from <a href="https://www.htslib.org">htslib.org</a>.
</p>
<p>
The file named O_aries_Feb_2010.2bit contains sequence data and is from the UCSC Genome
Bioinformatics Web site. To convert a .2bit to fasta, use twoBitToFa. The file
<a href="genome.txt">genome.txt</a> lists sequences and their sizes and was made from 
O_aries_Feb_2010.2bit sequence file using twoBitInfo.
</p>
<p>
Both twoBitInfo and twoBitToFa are
available from <a href="http://hgdownload.cse.ucsc.edu/admin/exe/">http://hgdownload.cse.ucsc.edu/admin/exe/</a>.
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[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[ ]O_aries_Feb_2010_refGene.bed.gz.tbi2023-06-16 13:43 13KTabix index file
[ ]O_aries_Feb_2010_all_mrna.psl.gz.tbi2023-06-16 13:43 22KTabix index file
[ ]O_aries_Feb_2010_all_est.psl.gz.tbi2023-06-16 13:43 334KTabix index file
[ ]O_aries_Feb_2010.2bit2023-06-16 13:43 718MSequence data in blat 2bit format
[ ]O_aries_Feb_2010_all_mrna.psl.gz2023-06-16 13:43 135KPSL (alignments) blat output file
[ ]O_aries_Feb_2010_all_est.psl.gz2023-06-16 13:43 11MPSL (alignments) blat output file
[ ]O_aries_Feb_2010_refGene.bed.gz2023-06-16 13:43 52KData from UCSC refGene table
[TXT]genome.txt2023-06-16 13:43 25KChromosome lengths and assembly information
[ ]annots.xml2023-06-16 13:43 1.0KAnnotation and data file list
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