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<h1>Physcomitrella patens (Jan 2008) genome assembly</h1>
<p>
The files listed below are formatted for visualization in the Integrated Genome
Browser, available from <a href="https://bioviz.org">BioViz.org</a>.
</p>
<p>
The gene model annotation file (P_patens_Jan_2008.bed.gz) was made
from version 1.6 GFF and gene information files downloaded from the <a
 href="https://www.cosmoss.org/physcome_project/wiki/Downloads">Cossmoss.org
Downloads page</a> in April, 2014.
</p>
<p>
The file named P_patens_Jan_2008.2bit contains sequence data. It
was made from fasta file also downloaded from <a
 href="http://www.cosmoss.org">CossMoss</a>.
To convert it back
to fasta, use twoBitToFa. 
</p>
The file
<a href="genome.txt">genome.txt</a> lists sequences and their sizes and was made from the 2bit sequence file using twoBitInfo.
</p>
<p>
You can get twoBitInfo, twoBitToFa, faToTwoBit, and related programs from <a href="http://hgdownload.cse.ucsc.edu/admin/exe/">http://hgdownload.cse.ucsc.edu/admin/exe/</a>. 
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[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[ ]P_patens_Jan_2008.bed.gz.tbi2023-06-16 13:49 153KTabix index file
[ ]P_patens_Jan_2008.2bit2023-06-16 13:49 115MSequence data in blat 2bit format
[TXT]genome.txt2023-06-16 13:49 40KChromosome lengths and assembly information
[ ]P_patens_Jan_2008.bed.gz2023-06-16 13:49 1.8MAnnotation or junction file
[ ]annots.xml2023-06-16 13:49 391 Annotation and data file list
[ ]cosmoss.genonaut.description.txt.gz2023-06-16 13:49 371K 
[ ]P.patens.V6_filtered_cosmoss_genes.gff.gz2023-06-16 13:49 4.6M 
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