Physcomitrella patens (Jan 2008) genome assembly
The files listed below are formatted for visualization in the Integrated Genome Browser, available from BioViz.org.
The gene model annotation file (P_patens_Jan_2008.bed.gz) was made from version 1.6 GFF and gene information files downloaded from the Cossmoss.org Downloads page in April, 2014.
The file named P_patens_Jan_2008.2bit contains sequence data. It was made from fasta file also downloaded from CossMoss. To convert it back to fasta, use twoBitToFa.
The file genome.txt lists sequences and their sizes and was made from the 2bit sequence file using twoBitInfo.You can get twoBitInfo, twoBitToFa, faToTwoBit, and related programs from http://hgdownload.cse.ucsc.edu/admin/exe/.
![[ICO]](/styling/icons/blank.svg){kind=icon} | Name | Last modified | Size | Description |
|---|---|---|---|---|
![[PARENTDIR]](/styling/icons/glyphicon-circle-arrow-up.svg){kind=icon} | Parent Directory | - | ||
![[ ]](/styling/icons/glyphicon-file.svg){kind=icon} | P_patens_Jan_2008.bed.gz.tbi | 2023-06-16 13:49 | 153K | Tabix index file |
| P_patens_Jan_2008.2bit | 2023-06-16 13:49 | 115M | Sequence data in blat 2bit format |
| genome.txt | 2023-06-16 13:49 | 40K | Chromosome lengths and assembly information |
![[ ]](/icons/compressed.gif){kind=icon} | P_patens_Jan_2008.bed.gz | 2023-06-16 13:49 | 1.8M | Annotation or junction file |
| annots.xml | 2023-06-16 13:49 | 391 | Annotation and data file list |
| cosmoss.genonaut.description.txt.gz | 2023-06-16 13:49 | 371K | |
| P.patens.V6_filtered_cosmoss_genes.gff.gz | 2023-06-16 13:49 | 4.6M |