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<h1>Pan troglodytes (Oct 2010) chimpanzee (CGSC 2.1.3/panTro3) genome assembly</h1>
<p>
The files listed below are formatted for visualization in the Integrated Genome
Browser, available from <a href="https://bioviz.org">BioViz.org</a>.
</p>
<p>
Annotation (bed) and alignment (psl) files (if available) were downloaded from the UCSC Genome
Bioinformatics Table Browser. Each file is named for its corresponding table in the
UCSC Genome database. See the <a href="annots.xml">annots.xml</a> meta-data file in
this directory for details.
</p>
<p>
Files with extension .gz were compressed and indexed using bgzip and
tabix tools from <a href="https://www.htslib.org">htslib.org</a>.
</p>
<p>
The file named P_troglodytes_Oct_2010.2bit contains sequence data and is from the UCSC Genome
Bioinformatics Web site. To convert a .2bit to fasta, use twoBitToFa. The file
<a href="genome.txt">genome.txt</a> lists sequences and their sizes and was made from 
P_troglodytes_Oct_2010.2bit sequence file using twoBitInfo.
</p>
<p>
Both twoBitInfo and twoBitToFa are
available from <a href="http://hgdownload.cse.ucsc.edu/admin/exe/">http://hgdownload.cse.ucsc.edu/admin/exe/</a>.
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[ICO]NameLast modifiedSizeDescription
[DIR]Parent Directory  -  
[   ]P_troglodytes_Oct_2010.2bit27-Sep-2018 13:23 822MSequence data in blat 2bit format
[   ]P_troglodytes_Oct_2010_all_est.psl.gz27-Sep-2018 13:23 784KPSL (alignments) blat output file
[   ]P_troglodytes_Oct_2010_all_est.psl.gz.tbi27-Sep-2018 13:23 85KTabix index file
[   ]P_troglodytes_Oct_2010_all_mrna.psl.gz27-Sep-2018 13:23 288KPSL (alignments) blat output file
[   ]P_troglodytes_Oct_2010_all_mrna.psl.gz.tbi27-Sep-2018 13:23 36KTabix index file
[   ]P_troglodytes_Oct_2010_refGene.bed.gz27-Sep-2018 13:23 115KData from UCSC refGene table
[   ]P_troglodytes_Oct_2010_refGene.bed.gz.tbi27-Sep-2018 13:23 24KTabix index file
[TXT]annots.xml27-Sep-2018 13:23 1.0KAnnotation and data file list
[TXT]genome.txt27-Sep-2018 13:23 654KChromosome lengths and assembly information
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