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<h1>Rattus norvegicus (Nov 2020) rat (mRatBN7.2/rn7) genome assembly</h1>
<p>
The files listed below are formatted for visualization in the Integrated Genome
Browser, available from <a href="https://bioviz.org">BioViz.org</a>.
</p>
<p>
Annotation (bed) and alignment (psl) files (if available) were downloaded from the UCSC Genome
Bioinformatics Table Browser. Each file is named for its corresponding table in the
UCSC Genome database. See the <a href="annots.xml">annots.xml</a> meta-data file in
this directory for details.
</p>
<p>
Files with extension .gz were compressed and indexed using bgzip and
tabix tools from <a href="https://www.htslib.org">htslib.org</a>.
</p>
<p>
The file named R_norvegicus_Nov_2020.2bit contains sequence data and is from the UCSC Genome
Bioinformatics Web site. To convert a .2bit to fasta, use twoBitToFa. The file
<a href="genome.txt">genome.txt</a> lists sequences and their sizes and was made from 
R_norvegicus_Nov_2020.2bit sequence file using twoBitInfo.
</p>
<p>
Both twoBitInfo and twoBitToFa are
available from <a href="http://hgdownload.cse.ucsc.edu/admin/exe/">http://hgdownload.cse.ucsc.edu/admin/exe/</a>.
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[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[ ]R_norvegicus_Nov_2020.2bit2023-07-24 18:36 660MSequence data in blat 2bit format
[ ]R_norvegicus_Nov_2020_all_est.psl.gz2023-07-24 18:36 45MPSL (alignments) blat output file
[ ]R_norvegicus_Nov_2020_all_est.psl.gz.tbi2023-07-24 18:36 691KTabix index file
[ ]R_norvegicus_Nov_2020_all_mrna.psl.gz2023-07-24 18:36 5.9MPSL (alignments) blat output file
[ ]R_norvegicus_Nov_2020_all_mrna.psl.gz.tbi2023-07-24 18:36 560KTabix index file
[ ]R_norvegicus_Nov_2020_ncbiRefSeq.bed.gz2023-07-24 18:36 4.8MAnnotation or junction file
[ ]R_norvegicus_Nov_2020_ncbiRefSeq.bed.gz.tbi2023-07-24 18:36 135KTabix index file
[ ]R_norvegicus_Nov_2020_refGene.bed.gz2023-07-24 18:36 1.5MData from UCSC refGene table
[ ]R_norvegicus_Nov_2020_refGene.bed.gz.tbi2023-07-24 18:36 76KTabix index file
[ ]annots.xml2023-07-24 18:36 1.5KAnnotation and data file list
[TXT]genome.txt2023-07-24 18:36 4.5KChromosome lengths and assembly information
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