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<html> <body> <h1>Ramazzottius varieornatus strain YOKOZUNA-1 (Nov 2016) genome assembly</h1> <p> The files listed below are formatted for visualization in the Integrated Genome Browser, available from <a href="https://bioviz.org">BioViz.org</a>. </p> <p> The gene model annotation file R_varieornatus_YOKOZUNA-1_Nov_2016_ncbiGene.bed.gz was downloaded from the UCSC Genome Bioinformatics Table Browser (Table: hub_3041413_ncbiGene) and converted to BED-detail (bed14) format July 3, 2024. </p> <p> The file named R_varieornatus_YOKOZUNA-1_Nov_2016.2bit contains sequence data. It was made from fasta file downloaded from <a href="https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_001949185.1//">NCBI</a>. To convert it back to fasta, use twoBitToFa. </p> <p> The file <a href="genome.txt">genome.txt</a> lists sequences and their sizes and was made from the 2bit sequence file using twoBitInfo. </p> <p> You can get twoBitInfo, twoBitToFa, faToTwoBit, and related programs from <a href="http://hgdownload.cse.ucsc.edu/admin/exe/">http://hgdownload.cse.ucsc.edu/admin/exe/</a>. </p> </body> </html>
Name | Last modified | Size | Description | |
---|---|---|---|---|
Parent Directory | - | |||
genome.txt | 2024-07-13 17:58 | 4.0K | Chromosome lengths and assembly information | |
R_varieornatus_YOKOZUNA-1_Nov_2016.2bit | 2024-07-13 17:58 | 15M | Sequence data in blat 2bit format | |
R_varieornatus_YOKOZUNA-1_Nov_2016_ncbiGene.bed.gz.tbi | 2024-07-13 17:58 | 14K | Tabix index file | |
R_varieornatus_YOKOZUNA-1_Nov_2016_ncbiGene.bed.gz | 2024-07-13 17:58 | 1.7M | Annotation or junction file | |
annots.xml | 2024-07-13 17:58 | 510 | Annotation and data file list |