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<h1>Chinese Spring bread wheat genome sequence IWGSC RefSeqv1.0</h1>
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<p>
This directory contains annotation and sequence data files from the bread wheat (Chinese Spring) IWGSC RefSeqv1.0 assembly version 1. Files are formatted for visualization in <a href="https://bioviz.org">Integrated Genome Browser</a> (IGB). 
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<p>
Files include:
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<p>
<ul>
<li>
2bit file - sequence file in two-bit format, created using
faToTwoBit. 
When users click <b>Load Sequence</b> buttons, IGB retrieves sequence data from this file. The 2bit file name must match the genome version.
To obtain a copy of faToTwoBit, visit <a href="http://hgdownload.cse.ucsc.edu/admin/exe/">http://hgdownload.cse.ucsc.edu/admin/exe/</a>. 
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<li>
annots.xml - meta-data file that lists available data sets and specifies how they will look once loaded into <a href="http://bioviz.org/igb">Integrated Genome Browser</a>.

<li>genome.txt - meta-data file that lists genomic sequences and their sizes, created using twoBitInfo using the 2bit file. To obtain a copy of twoBitInfo, visit <a href="http://hgdownload.cse.ucsc.edu/admin/exe/">http://hgdownload.cse.ucsc.edu/admin/exe/</a>

<li>reference gene model annotations in bed or bed detail format, compressed using bgzip and indexed using tabix (See: <a href="http://bioinformatics.oxfordjournals.org/content/27/5/718">Tabix: fast retrieval of sequence features from generic TAB-delimited files</a> and <a href="http://genome.ucsc.edu/FAQ/FAQformat.html">http://genome.ucsc.edu/FAQ/FAQformat.html</a>.)
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<b>Note:</b> Gene model annotation files have been re-formatted for fast transfer over the internet and for visualization in IGB. 
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For more information about quickload, visit <a href="https://bioviz.org">bioviz.org</a> and visit the on-line, searchable IGB User's Guide.
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[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[ ]T_aestivum_Aug_2018.2bit2020-09-23 23:45 3.5GSequence data in blat 2bit format
[TXT]genome.txt2023-06-16 14:12 286 Chromosome lengths and assembly information
[ ]T_aestivum_Aug_2018.bed.gz.csi2023-06-16 14:12 663KAnnotation or junction file
[ ]T_aestivum_Aug_2018.bed.gz2023-06-16 14:12 6.2MAnnotation or junction file
[ ]T_aestivum_Aug_2018.bed2023-06-16 14:13 24MAnnotation or junction file
[ ]annots.xml2023-06-16 14:13 289 Annotation and data file list
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