Index of /quickload/T_castaneum_Mar_2008

	Name	Last modified	Size	Description
	Parent Directory		-
	Scaffold_Region.gff3.gz	2023-06-16 13:30	35K
	annots.xml	2023-06-16 13:30	716	Annotation and data file list
	genome.txt	2023-06-16 13:30	168	Chromosome lengths and assembly information
	T_castaneum_Mar_2008.2bit	2023-06-16 13:30	55M	Sequence data in blat 2bit format
	Scaffold_Region.gff3.gz.tbi	2023-06-16 13:30	15K	Tabix index file
	T_castaneum_Mar_2008.gff3.gz.tbi	2023-06-16 13:30	95K	Tabix index file
	T_castaneum_Mar_2008.gff3.gz	2023-06-16 13:30	1.5M	Tribolium castaneum (March 2008) red flour beetle

Files as follows:
-Scaffold_region.gff3.gz is the layout of each contig across each chromosome, as well as across the concatenated 'Unknown' chromosome. Notice that there are NO spacers between the "DS" series of contigs; there is a 10,000 N spacer between each contig of the "GG" series. 

-T_castanum_Mar_2008.gff3 contains sequence from chromosome files (e.g. ChLG2_official_gene.gff3) plus the Unknown_official_gene.gff3.

-T_castaneum_Mar_2008.2bit is a 2bit sequence file converted from a file named Triboleum_genome_sequence.fasta. The additional 'Unknown' chromosome was assembled by Alyssa A. Gulledge. Unknown has each of the DS series (in sequential order) abut to each other; the transition into the GG series is also abut, but between each GG contig is 10,000bp spacer of N.