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<h1>JGI9.1/xenTro9 Xenopus tropicalis genome, Jul 2016 genome assembly</h1>
<p>
The files listed below are formatted for visualization in the Integrated Genome
Browser, available from <a href="https://bioviz.org">BioViz.org</a>.
</p>
<p>
Annotation (bed) and alignment (psl) files (if available) were downloaded from the UCSC Genome
Bioinformatics Table Browser. Each file is named for its corresponding table in the
UCSC Genome database. See the <a href="annots.xml">annots.xml</a> meta-data file in
this directory for details.
</p>
<p>
Files with extension .gz were compressed and indexed using bgzip and
tabix tools from <a href="https://www.htslib.org">htslib.org</a>.
</p>
<p>
The file named X_tropicalis_Jul_2016.2bit contains sequence data and is from the UCSC Genome
Bioinformatics Web site. To convert a .2bit to fasta, use twoBitToFa. The file
<a href="genome.txt">genome.txt</a> lists sequences and their sizes and was made from 
X_tropicalis_Jul_2016.2bit sequence file using twoBitInfo.
</p>
<p>
Both twoBitInfo and twoBitToFa are
available from <a href="http://hgdownload.cse.ucsc.edu/admin/exe/">http://hgdownload.cse.ucsc.edu/admin/exe/</a>.
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[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[ ]X_tropicalis_Jul_2016_ncbiRefSeq.bed.gz.tbi2023-06-16 13:15 99KTabix index file
[ ]X_tropicalis_Jul_2016.2bit2023-06-16 13:15 357MSequence data in blat 2bit format
[TXT]genome.txt2023-06-16 13:15 175KChromosome lengths and assembly information
[ ]X_tropicalis_Jul_2016_ncbiRefSeq.bed.gz2023-06-16 13:15 2.7MAnnotation or junction file
[ ]annots.xml2023-06-16 13:15 376 Annotation and data file list
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