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<h1>JGI4.2/xenTro3 Xenopus tropicalis genome, Nov 2009 genome assembly</h1>
<p>
The files listed below are formatted for visualization in the Integrated Genome
Browser, available from <a href="https://bioviz.org">BioViz.org</a>.
</p>
<p>
Annotation (bed) and alignment (psl) files (if available) were downloaded from the UCSC Genome
Bioinformatics Table Browser. Each file is named for its corresponding table in the
UCSC Genome database. See the <a href="annots.xml">annots.xml</a> meta-data file in
this directory for details.
</p>
<p>
Files with extension .gz were compressed and indexed using bgzip and
tabix tools from <a href="https://www.htslib.org">htslib.org</a>.
</p>
<p>
The file named X_tropicalis_Nov_2009.2bit contains sequence data and is from the UCSC Genome
Bioinformatics Web site. To convert a .2bit to fasta, use twoBitToFa. The file
<a href="genome.txt">genome.txt</a> lists sequences and their sizes and was made from 
X_tropicalis_Nov_2009.2bit sequence file using twoBitInfo.
</p>
<p>
Both twoBitInfo and twoBitToFa are
available from <a href="http://hgdownload.cse.ucsc.edu/admin/exe/">http://hgdownload.cse.ucsc.edu/admin/exe/</a>.
</p>
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[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[TXT]genome.txt2023-06-16 13:41 275KChromosome lengths and assembly information
[ ]annots.xml2023-06-16 13:41 1.0KAnnotation and data file list
[ ]X_tropicalis_Nov_2009_refGene.bed.gz2023-06-16 13:41 548KData from UCSC refGene table
[ ]X_tropicalis_Nov_2009_all_mrna.bed.gz2023-06-16 13:41 960KAnnotation or junction file
[ ]X_tropicalis_Nov_2009_all_est.psl.gz.tbi2023-06-16 13:41 489KTabix index file
[ ]X_tropicalis_Nov_2009_all_est.psl.gz2023-06-16 13:41 50MPSL (alignments) blat output file
[ ]X_tropicalis_Nov_2009.2bit2023-06-16 13:41 373MSequence data in blat 2bit format
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