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<h1>C. elegans May 2008 (WS190/ce6) genome assembly</h1>
<p>
The files listed below are formatted for visualization in the Integrated Genome
Browser, available from <a href="https://bioviz.org">BioViz.org</a>.
</p>
<p>
Annotation (bed) and alignment (psl) files (if available) were downloaded from the UCSC Genome
Bioinformatics Table Browser. Each file is named for its corresponding table in the
UCSC Genome database. See the <a href="annots.xml">annots.xml</a> meta-data file in
this directory for details.
</p>
<p>
Files with extension .gz were compressed and indexed using bgzip and
tabix tools from <a href="https://www.htslib.org">htslib.org</a>.
</p>
<p>
The file named C_elegans_May_2008.2bit contains sequence data and is from the UCSC Genome
Bioinformatics Web site. To convert a .2bit to fasta, use twoBitToFa. The file
<a href="genome.txt">genome.txt</a> lists sequences and their sizes and was made from 
C_elegans_May_2008.2bit sequence file using twoBitInfo.
</p>
<p>
Both twoBitInfo and twoBitToFa are
available from <a href="http://hgdownload.cse.ucsc.edu/admin/exe/">http://hgdownload.cse.ucsc.edu/admin/exe/</a>.
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[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[ ]annots.xml2023-06-16 14:05 1.0KAnnotation and data file list
[ ]C_elegans_May_2008_refGene.bed.gz.tbi2023-06-16 14:05 59KTabix index file
[ ]C_elegans_May_2008.2bit2023-06-16 14:05 25MSequence data in blat 2bit format
[ ]sangerPseudoGene.bed.gz2023-06-16 14:05 27KAnnotation or junction file
[ ]sangerGene.bed.gz2023-06-16 14:05 1.1MAnnotation or junction file
[TXT]genome.txt2023-06-16 14:05 99 Chromosome lengths and assembly information
[ ]sangerPseudoGene.bed.gz.tbi2023-06-16 14:05 9.1KTabix index file
[ ]sangerGene.bed.gz.tbi2023-06-16 14:05 59KTabix index file
[ ]C_elegans_May_2008_refGene.bed.gz2023-06-16 14:05 1.2MData from UCSC refGene table
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