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<h1>Drosophila melanogaster (Apr 2006) fruit fly (dm3/BDGP R5) genome assembly</h1>
<p>
The files listed below are formatted for visualization in the Integrated Genome
Browser, available from <a href="https://bioviz.org">BioViz.org</a>.
</p>
<p>
Annotation (bed) and alignment (psl) files (if available) were downloaded from the UCSC Genome
Bioinformatics Table Browser. Each file is named for its corresponding table in the
UCSC Genome database. See the <a href="annots.xml">annots.xml</a> meta-data file in
this directory for details.
</p>
<p>
Files with extension .gz were compressed and indexed using bgzip and
tabix tools from <a href="https://www.htslib.org">htslib.org</a>.
</p>
<p>
The file named D_melanogaster_Apr_2006.2bit contains sequence data and is from the UCSC Genome
Bioinformatics Web site. To convert a .2bit to fasta, use twoBitToFa. The file
<a href="genome.txt">genome.txt</a> lists sequences and their sizes and was made from 
D_melanogaster_Apr_2006.2bit sequence file using twoBitInfo.
</p>
<p>
Both twoBitInfo and twoBitToFa are
available from <a href="http://hgdownload.cse.ucsc.edu/admin/exe/">http://hgdownload.cse.ucsc.edu/admin/exe/</a>.
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[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[ ]D_melanogaster_Apr_2006.2bit2023-06-16 13:41 42MSequence data in blat 2bit format
[ ]D_melanogaster_Apr_2006_all_est.psl.gz2023-06-16 13:41 22MPSL (alignments) blat output file
[ ]D_melanogaster_Apr_2006_all_est.psl.gz.tbi2023-06-16 13:41 97KTabix index file
[ ]D_melanogaster_Apr_2006_all_mrna.psl.gz2023-06-16 13:41 2.7MPSL (alignments) blat output file
[ ]D_melanogaster_Apr_2006_all_mrna.psl.gz.tbi2023-06-16 13:41 62KTabix index file
[ ]D_melanogaster_Apr_2006_refGene.bed.gz2023-06-16 13:41 1.1MData from UCSC refGene table
[ ]D_melanogaster_Apr_2006_refGene.bed.gz.tbi2023-06-16 13:41 58KTabix index file
[ ]annots.xml2023-06-16 13:41 1.4KAnnotation and data file list
[ ]dm3-blacklist.v2.bed.gz2023-06-16 13:41 2.4KAnnotation or junction file
[ ]dm3-blacklist.v2.bed.gz.tbi2023-06-16 13:41 2.9KTabix index file
[TXT]genome.txt2023-06-16 13:41 228 Chromosome lengths and assembly information
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