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<h1>Drosophila melanogaster (Aug 2014) fruit fly (BDGP Release 6 + ISO1 MT/dm6) genome assembly</h1>
<p>
The files listed below are formatted for visualization in the Integrated Genome
Browser, available from <a href="https://bioviz.org">BioViz.org</a>.
</p>
<p>
Annotation (bed) and alignment (psl) files (if available) were downloaded from the UCSC Genome
Bioinformatics Table Browser. Each file is named for its corresponding table in the
UCSC Genome database. See the <a href="annots.xml">annots.xml</a> meta-data file in
this directory for details.
</p>
<p>
Files with extension .gz were compressed and indexed using bgzip and
tabix tools from <a href="https://www.htslib.org">htslib.org</a>.
</p>
<p>
The file named D_melanogaster_Aug_2014.2bit contains sequence data and is from the UCSC Genome
Bioinformatics Web site. To convert a .2bit to fasta, use twoBitToFa. The file
<a href="genome.txt">genome.txt</a> lists sequences and their sizes and was made from 
D_melanogaster_Aug_2014.2bit sequence file using twoBitInfo.
</p>
<p>
Both twoBitInfo and twoBitToFa are
available from <a href="http://hgdownload.cse.ucsc.edu/admin/exe/">http://hgdownload.cse.ucsc.edu/admin/exe/</a>.
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[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[ ]dm6-blacklist.v2.bed.gz.tbi2023-06-16 13:34 2.0KTabix index file
[ ]D_melanogaster_Aug_2014_refGene.bed.gz.tbi2024-06-04 09:51 18KTabix index file
[ ]D_melanogaster_Aug_2014.2bit2023-06-16 13:34 35MSequence data in blat 2bit format
[ ]D_melanogaster_Aug_2014_refGene.bed.gz2024-06-04 09:51 1.4MData from UCSC refGene table
[TXT]genome.txt2023-06-16 13:34 44KChromosome lengths and assembly information
[ ]dm6-blacklist.v2.bed.gz2023-06-16 13:34 1.6KAnnotation or junction file
[ ]annots.xml2023-06-16 13:34 848 Annotation and data file list
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