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<h1>Mus musculus (Dec 2011) mouse (GRCm38/mm10) genome assembly</h1>
<p>
The files listed below are formatted for visualization in the Integrated Genome
Browser, available from <a href="https://bioviz.org">BioViz.org</a>.
</p>
<p>
Annotation (bed) and alignment (psl) files (if available) were downloaded from the UCSC Genome
Bioinformatics Table Browser. Each file is named for its corresponding table in the
UCSC Genome database. See the <a href="annots.xml">annots.xml</a> meta-data file in
this directory for details.
</p>
<p>
Files with extension .gz were compressed and indexed using bgzip and
tabix tools from <a href="https://www.htslib.org">htslib.org</a>.
</p>
<p>
The file named M_musculus_Dec_2011.2bit contains sequence data and is from the UCSC Genome
Bioinformatics Web site. To convert a .2bit to fasta, use twoBitToFa. The file
<a href="genome.txt">genome.txt</a> lists sequences and their sizes and was made from 
M_musculus_Dec_2011.2bit sequence file using twoBitInfo.
</p>
<p>
Both twoBitInfo and twoBitToFa are
available from <a href="http://hgdownload.cse.ucsc.edu/admin/exe/">http://hgdownload.cse.ucsc.edu/admin/exe/</a>.
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[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[ ]annots.xml2023-06-16 13:27 1.4KAnnotation and data file list
[ ]M_musculus_Dec_2011_all_est.psl.gz.tbi2023-06-16 13:27 1.0MTabix index file
[ ]M_musculus_Dec_2011_all_mrna.psl.gz.tbi2023-06-16 13:27 485KTabix index file
[TXT]genome.txt2023-06-16 13:27 1.4KChromosome lengths and assembly information
[ ]M_musculus_Dec_2011.2bit2023-06-16 13:27 682MSequence data in blat 2bit format
[ ]M_musculus_Dec_2011_all_est.psl.gz2023-06-16 13:27 177MPSL (alignments) blat output file
[ ]M_musculus_Dec_2011_refGene.bed.gz.tbi2023-06-16 13:27 195KTabix index file
[ ]M_musculus_Dec_2011_all_mrna.psl.gz2023-06-16 13:27 14MPSL (alignments) blat output file
[ ]mm10-blacklist.v2.bed.gz.tbi2023-06-16 13:27 35KTabix index file
[ ]M_musculus_Dec_2011_refGene.bed.gz2023-06-16 13:27 2.1MData from UCSC refGene table
[ ]mm10-blacklist.v2.bed.gz2023-06-16 13:27 30KAnnotation or junction file
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