strapdown: '/styling/strapdown/v/0.2/strapdown.js'}; 
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<h1>Poplar genome version 3</h1>
<p>
Files listed below are formatted for visualization in the Integrated Genome
Browser, available from <a href="https://bioviz.org">BioViz.org</a>.
</p>
<p>
The file named P_trichocarpa_Aug_2012.bed.gz contains data reformatted from:
<ul>
<li>ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Ptrichocarpa/annotation/Ptrichocarpa_210_defline.txt
<li>ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Ptrichocarpa/annotation/Ptrichocarpa_210_gene_exons.gff3.gz
</ul>
<p>
See the <a href="annots.xml">annots.xml</a> meta-data file in this directory for
description and date of download.
</p>
<p>
Files with extension .gz were compressed and indexed using bgzip and
tabix tools from Heng Li. 
</p>
<p>
The .2bit file contains sequence data reformatted from:
</p>
<p>
ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Ptrichocarpa/assembly/Ptrichocarpa_210.fa.gz
</p>
<p>
Re-formatting was done using twoBitToFa from <a href="http://hgdownload.cse.ucsc.edu/admin/exe/">http://hgdownload.cse.ucsc.edu/admin/exe/</a>.
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[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[ ]annots.xml2023-06-16 14:09 6.4KAnnotation and data file list
[ ]P_trichocarpa_Aug_2012.bed.gz2023-06-16 14:09 3.2MAnnotation or junction file
[TXT]genome.txt2023-06-16 14:09 27KChromosome lengths and assembly information
[ ]P_trichocarpa_Aug_2012.2bit2023-06-16 14:09 104MSequence data in blat 2bit format
[ ]P_trichocarpa_Aug_2012.bed.gz.tbi2023-06-16 14:09 206KTabix index file
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