Sorghum bicolor (Jun 2013) version 2.0 genome assembly
The files listed below are formatted for visualization in the Integrated Genome Browser, available from BioViz.org.
The gene model annotation file (S_bicolor_Jun_2013.bed.gz) was made from GFF and gene information files downloaded in Nov, 2014 from Phytozome.
The file named S_bicolor_Jun_2013.2bit contains sequence data. It was made from fasta file also downloaded from Phytozome. To convert it back to fasta, use twoBitToFa.
The file genome.txt lists sequences and their sizes and was made from the 2bit sequence file using twoBitInfo.For more information, see this post at LoraineLab.org.
You can get twoBitInfo, twoBitToFa, faToTwoBit, and related programs from http://hgdownload.cse.ucsc.edu/admin/exe/.
![[ICO]](/styling/icons/blank.svg){kind=icon} | Name | Last modified | Size | Description |
|---|---|---|---|---|
![[PARENTDIR]](/styling/icons/glyphicon-circle-arrow-up.svg){kind=icon} | Parent Directory | - | ||
![[ ]](/styling/icons/glyphicon-file.svg){kind=icon} | annots.xml | 2023-06-16 13:37 | 366 | Annotation and data file list |
| genome.txt | 2023-06-16 13:37 | 25K | Chromosome lengths and assembly information |
| S_bicolor_Jun_2013.bed.gz.tbi | 2023-06-16 13:37 | 187K | Tabix index file |
![[ ]](/icons/compressed.gif){kind=icon} | S_bicolor_Jun_2013.bed.gz | 2023-06-16 13:37 | 1.8M | Annotation or junction file |
| S_bicolor_Jun_2013.2bit | 2023-06-16 13:37 | 173M | Sequence data in blat 2bit format |