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<title>IGB QuickLoad site for the tomato Solanum lycopersicum</title>
<h1>Solanum lycopersicum, ITAG 3.0</h1>
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The data files listed below are for visualization in the Integrated Genome
Browser, available from <a href="https://bioviz.org">BioViz.org</a>.
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<p>
Sequence (.2bit) and gene models (.bed.gz) data files were re-formatted from files downloaded in August, 2017 from the <a href="http://solgenomics.net/organism/Solanum_lycopersicum/genome">SolGenomics Web site</a>. The sequence data were from the ITAG3.0 release of the tomato genome.
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<p> 
Files with extension .gz were compressed and indexed using bgzip and
tabix tools from Heng Li. 
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<p>
The .2bit file was converted from fasta to .2bit format using the faToTwoBit converter from Jim Kent. The genome.txt file was created using twoBitInfo, also from Jim Kent. Executables for these and other tools from Jim Kent are available from <a href="http://hgdownload.cse.ucsc.edu/admin/exe/">http://hgdownload.cse.ucsc.edu/admin/exe/</a>.
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[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[ ]S_lycopersicum_Feb_2017.bed.gz2023-06-16 13:16 2.2MAnnotation or junction file
[TXT]genome.txt2023-06-16 13:16 247 Chromosome lengths and assembly information
[ ]S_lycopersicum_Feb_2017.bed.gz.tbi2023-06-16 13:16 201KTabix index file
[ ]S_lycopersicum_Feb_2017.2bit2023-06-16 13:16 198MSequence data in blat 2bit format
[ ]pubmed_id_31191588.bed.gz2023-06-16 13:16 9.1MAnnotation or junction file
[ ]pubmed_id_31191588.bed.gz.tbi2023-06-16 13:16 85KTabix index file
[ ]annots.xml2023-06-16 13:16 797 Annotation and data file list
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