Index of /quickload/S_lycopersicum_Feb

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<title>IGB QuickLoad site for the tomato Solanum lycopersicum</title>
<h1>Solanum lycopersicum, ITAG 3.0</h1>
<p>
The data files listed below are for visualization in the Integrated Genome
Browser, available from <a href="https://bioviz.org">BioViz.org</a>.
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<p>
Sequence (.2bit) and gene models (.bed.gz) data files were re-formatted from files downloaded in August, 2017 from the <a href="http://solgenomics.net/organism/Solanum_lycopersicum/genome">SolGenomics Web site</a>. The sequence data were from the ITAG3.0 release of the tomato genome.
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<p> 
Files with extension .gz were compressed and indexed using bgzip and
tabix tools from Heng Li. 
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<p>
The .2bit file was converted from fasta to .2bit format using the faToTwoBit converter from Jim Kent. The genome.txt file was created using twoBitInfo, also from Jim Kent. Executables for these and other tools from Jim Kent are available from <a href="http://hgdownload.cse.ucsc.edu/admin/exe/">http://hgdownload.cse.ucsc.edu/admin/exe/</a>.
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Name	Last modified	Size	Description
Parent Directory		-
S_lycopersicum_Feb_2017.2bit	2023-06-16 13:16	198M	Sequence data in blat 2bit format
pubmed_id_31191588.bed.gz	2023-06-16 13:16	9.1M	Annotation or junction file
S_lycopersicum_Feb_2017.bed.gz	2023-06-16 13:16	2.2M	Annotation or junction file
S_lycopersicum_Feb_2017.bed.gz.tbi	2023-06-16 13:16	201K	Tabix index file
pubmed_id_31191588.bed.gz.tbi	2023-06-16 13:16	85K	Tabix index file
annots.xml	2023-06-16 13:16	797	Annotation and data file list
genome.txt	2023-06-16 13:16	247	Chromosome lengths and assembly information

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