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<h1>Homo sapiens (Feb 2009) human being (GRCh37/hg19) genome assembly</h1>
<p>
The files listed below are formatted for visualization in the Integrated Genome
Browser, available from <a href="https://bioviz.org">BioViz.org</a>.
</p>
<p>
Annotation (bed) and alignment (psl) files (if available) were downloaded from the UCSC Genome
Bioinformatics Table Browser. Each file is named for its corresponding table in the
UCSC Genome database. See the <a href="annots.xml">annots.xml</a> meta-data file in
this directory for details.
</p>
<p>
Files with extension .gz were compressed and indexed using bgzip and
tabix tools from <a href="https://www.htslib.org">htslib.org</a>.
</p>
<p>
The file named H_sapiens_Feb_2009.2bit contains sequence data and is from the UCSC Genome
Bioinformatics Web site. To convert a .2bit to fasta, use twoBitToFa. The file
<a href="genome.txt">genome.txt</a> lists sequences and their sizes and was made from 
H_sapiens_Feb_2009.2bit sequence file using twoBitInfo.
</p>
<p>
Both twoBitInfo and twoBitToFa are
available from <a href="http://hgdownload.cse.ucsc.edu/admin/exe/">http://hgdownload.cse.ucsc.edu/admin/exe/</a>.
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[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[ ]annots.xml2023-06-16 14:05 1.5KAnnotation and data file list
[ ]hg19-blacklist.v2.bed.gz2023-06-16 14:05 7.6KAnnotation or junction file
[TXT]genome.txt2023-06-16 14:05 1.9KChromosome lengths and assembly information
[ ]cytoBand.cyt2023-06-16 14:05 30KCytobands file
[ ]H_sapiens_Feb_2009_refGene.bed.gz2023-06-16 14:05 2.7MData from UCSC refGene table
[ ]H_sapiens_Feb_2009_all_est.psl.gz2023-06-16 14:05 368MPSL (alignments) blat output file
[ ]H_sapiens_Feb_2009_all_mrna.psl.gz2023-06-16 14:05 16MPSL (alignments) blat output file
[ ]H_sapiens_Feb_2009.2bit2023-06-16 14:05 778MSequence data in blat 2bit format
[ ]H_sapiens_Feb_2009_all_est.psl.gz.tbi2023-06-16 14:05 1.4MTabix index file
[ ]H_sapiens_Feb_2009_all_mrna.psl.gz.tbi2023-06-16 14:05 459KTabix index file
[ ]H_sapiens_Feb_2009_refGene.bed.gz.tbi2023-06-16 14:05 210KTabix index file
[ ]hg19-blacklist.v2.bed.gz.tbi2023-06-16 14:05 12KTabix index file
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